PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018346.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 472aa    MW: 47340.2 Da    PI: 6.6791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018346.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-082683061255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Do018346.1 268 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 306
                 9*****************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-12248313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.56256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-8262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11268316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6268306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-6272309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MQPTTREMQA MAGGDKISLD DLRAAGGGVH DDFLDQMLGG LPPSAWPELA SAVGAKAPEG  60
GAHAEGMQHQ QHQQFGGGLY DESALLASRL REHQISGCGG AESAEAAKQM VLQQLADLRH  120
GHHMLLQGMG RSTGGGGDGG LLLPLSLGSG GGSGGDVQAL LKAANSAGEV AGVFSGAFAG  180
SLQQQQQHFQ QHPQQQTAPL PGQGFGGGGG GGGGASGGAS QPQAGASGGG AAAPPRQRVR  240
ARRGQATDPH SIAERVSYAT TLLLLPLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID  300
YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EGRGGAPAAA GSDGLAVTEQ QVAKLMEEDM  360
GTAMQYLQGK GLCLMPVSLA SAISSATCHM RPPVGGPAGL GVAAAAHHMA AMRLPPGMNG  420
GGADAAAAVP ASPSMSVLTA QSAMANGAGG ADGEGSRSQQ QHPKDAASVS KP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620760.0BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279380.0KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956830.10.0PREDICTED: glycine, alanine and asparagine-rich protein
SwissprotQ9ZUG93e-73BH066_ARATH; Transcription factor bHLH66
TrEMBLK3ZSX80.0K3ZSX8_SETIT; Uncharacterized protein
STRINGSi029708m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-49LJRHL1-like 1